As part of the series on development of early career researchers in the lab, we spent three sessions over three weeks learning the basics of R. In my book “The Digital Cell”, I advocate R as the main number-crunching software but the R literacy in my lab is actually quite mixed. In order to know […]
Get Better: CV Clinic
Part of a series on the development of Early Career Researchers in the lab. The idea for the CV clinic came from the lab themselves. We had previously had a session on creating a research profile and a large part of that session was spent looking at CVs. We scrutinised some anonymised CVs and suggested improvements […]
Get Better: creating a research profile
Part of a series on the development of Early Career Researchers in the lab. We spent a session discussing how to create a research profile. This led to a second session on CVs. Here is an outline of what we covered. CVs We talked about different CV formats first of all. We focussed on academic […]
Get Better: early career researcher development
How can we contribute to the development of early career researchers in a lab environment? I’m talking about how people in the lab acquire “soft skills” or “get better” in ways that are parallel to doing research. This sort of training can get overlooked in the chase for new results and the excitement of doing […]
Methods papers for MD997 – 2020 edition
I run a Masters module called MD997. Over six weeks, students have to write a grant proposal and then assess their peers’ proposals at a mock grant panel. Each student bases their proposal on a paper. They present that paper to the class and then they write their proposal using the paper as a springboard. […]
Walk This Way
Over the holidays, I had an idea about looping an animation between two images. I wrote some code to do this in Igor Pro (sorry, no R this time…). This post describes how the code works and how you can make a similar animation. There was a reason to do this animation, but as a […]
Modern Cell Biology Is Computational
I wrote a short opinion piece for the December Newsletter for the American Society for Cell Biology (ASCB). The content is reproduced below, or you can read the newsletter version here on page 14 of the PDF. The theme of this year’s ASCB|EMBO Meeting is Cell Biology for the 21st Century. So what skills are essential […]
Not What You Want II
This is a follow up to a previous post. Despite what the title says, it is what we wanted. Our paper on dongles has just been published in Journal of Cell Science. The previous post on quantixed, explained all about the paper and the background to it. The journal featured our paper as a research […]
Tiny Universe: new paper on intracellular nanovesicles
We have a new paper out! You can access it here. The paper in a nutshell We have discovered a new class of trafficking vesicle inside cells. These vesicles are very small (30 nm across) and we’ve called them intracellular nanovesicles, or INVs for short. What is a trafficking vesicle? Humans are built from lots […]
A Book Like This: The Digital Cell
It’s real! I recently received a physical copy of my book, The Digital Cell: Cell Biology as a Data Science. It is published by Cold Spring Harbor Laboratory Press and is available here. The official release date is 1st December 2019. As I’ve described before, “The Digital Cell” a handbook to doing cell, developmental and […]