Having recently got my head around violin plots, I thought I would explain what they are and why you might want to use them. There are several options when it comes to plotting summary data. I list them here in order of granularity, before describing violin plots and how to plot them in some detail. […]
Category: computing
My Favorite Things
I realised recently that I’ve maintained a consistent iTunes library for ~10 years. For most of that time I’ve been listening exclusively to iTunes, rather than to music in other formats. So the library is a useful source of information about my tastes in music. It should be possible to look at who are my favourite artists, what bands need […]
Belly Button Window
A bit of navel gazing for this post. Since moving the blog to wordpress.com in the summer, it recently accrued 5000 views. Time to analyse what people are reading… The most popular post on the blog (by a long way) is “Strange Things“, a post about the eLife impact factor (2824 views). The next most popular […]
What The World Is Waiting For
The transition for scientific journals from print to online has been slow and painful. And it is not yet complete. This week I got an RSS alert to a “new” paper in Oncogene. When I downloaded it, something was familiar… very familiar… I’d read it almost a year ago! Sure enough, the AOP (ahead of print […]
Tips from the Blog II
An IgorPro tip this week. The default font for plots is Geneva. Most of our figures are assembled using Helvetica for labelling. The default font can be changed in Igor Graph Preferences, but Preferences need to be switched on in order to be implemented. Anyway, I always seem to end up with a mix of Geneva […]
Six Plus One
Last week, ALM (article-level metric) data for PLoS journals were uploaded to Figshare with the invitation to do something cool with it. Well, it would be rude not to. Actually, I’m one of the few scientists on the planet that hasn’t published a paper with Public Library of Science (PLoS), so I have no personal agenda here. […]
You Know My Name (Look Up The Number)
What is your h-index on Twitter? This thought crossed my mind yesterday when I saw a tweet that was tagged #academicinsults It occurred to me that a Twitter account is a kind of micro-publishing platform. So what would “publication metrics” look like for Twitter? Twitter makes analytics available, so they can easily be crunched. The main […]
Round and Round
I thought I’d share a procedure for rotating a 2D set of coordinates about the origin. Why would you want do this? Well, we’ve been looking at cell migration in 2D – tracking nuclear position over time. Cells migrate at random and I previously blogged about ways to visualise these tracks more clearly. Part of […]
Sure To Fall
What does the life cycle of a scientific paper look like? It stands to reason that after a paper is published, people download and read the paper and then if it generates sufficient interest, it will begin to be cited. At some point these citations will peak and the interest will die away as the work […]
Tips from the Blog I
What is the best music to listen to while writing a manuscript or grant proposal? OK, I know that some people prefer silence and certainly most people hate radio chatter while trying to concentrate. However, if you like listening to music, setting an iPod on shuffle is no good since a track by Napalm Death […]