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Tag: FIJI

Everything In Its Right Place

Something that has driven me nuts for a while is the bug in FIJI/ImageJ when making montages of image stacks. This post is about a solution to this problem. What’s a montage? You have a stack of images and you want to array them in m rows by n columns. This is useful for showing a gallery […]

6th July 2016By Stephen Royle computing, publishing, science figures, FIJI, Igor, IgorPro, ImageJOne Comment

Tips from the blog VII: Recolour Z-stack and Save Projection

I’m putting this up here in case it is useful for somebody. We capture Z-stacks on a Perkin Elmer Spinning Disk microscope system. I wanted to turn each stack into a single image so that we could quickly compare them. This simple macro does the job. We import the images straight from the *.mvd2 library using […]

21st July 2015By Stephen Royle computing, science FIJI, ImageJ, microscopy, tftb

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