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Tag: organisation

Bird’s Eye View: using R to generate inventory maps for lab reagents

This is a rather niche post, but the method can likely be adapted for other use cases. In the lab we have many different cell lines stored in liquid nitrogen. The arrangement is: Ideally, to retrieve the correct vial from the cell store requires a map. We have a FileMaker Pro database of all of […]

14th March 2024By Stephen Royle computing, science ggplot, lablife, organisation, Rstats

Trellisaze II: Updated guide to using Trello in the lab

Back in 2015, I wrote a guide to using Trello for lab organisation. I figured it was time for an update because a few things have changed since then and the topic of using Trello for larger labs came up on Twitter. Note that other kanban-style software is available. Basic Trello setup I set up […]

12th July 2021By Stephen Royle computing lablife, organisation, Trello

Super Automatic: computer-based tools for research

Since I have now written several posts on this. I thought I would summarise the computer-based tools that we are using in the lab to automate our work and organise ourselves. Electronic lab notebook – there are previous posts from me on picking an ELN platform and how to set up a WordPress ELN as well […]

19th December 2018By Stephen Royle computing, science advice, lablife, organisationOne Comment

Do It Yourself: Lab Notebook Archiving Project

A while back, the lab moved to an electronic lab notebook (details here and here). One of the drivers for this move was the huge number of hard copy lab note books that had accumulated in the lab over >10 years. Switching to an ELN solved this problem for the future, but didn’t make the […]

24th April 2018By Stephen Royle science advice, organisation

Adventures in Code V: making a map of Igor functions

I’ve generated a lot of code for IgorPro. Keeping track of it all has got easier since I started using GitHub – even so – I have found myself writing something only to discover that I had previously written the same thing. I was thinking that it would be good to make a list of […]

10th May 2017By Stephen Royle adventures in code, computing bash, grep, Igor, IgorPro, organisation, terminal

Notes To The Future

Previously I wrote about our move to electronic lab notebooks (ELNs). This post contains the technical details to understand how it works for us. You can even replicate our setup if you want to take the plunge. Why go electronic? Many reasons: I wanted to be able to quickly find information in our lab books. […]

27th April 2017By Stephen Royle computing, science lablife, organisation, productivity5 Comments

The Soft Bulletin: Electronic Lab Notebooks

We finally took the plunge and adopted electronic lab notebook (ELNs) for the lab. This short post describes our choice of software. I will write another post about how it’s going, how I set it up and other technical details. tl;dr we are using WordPress as our ELN. First, so you can understand my wishlist of requirements […]

25th April 2017By Stephen Royle computing, science lablife, organisation, productivity13 Comments
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