Previously, I took advantage of a dataset that linked preprints to their published counterparts to look at the fraction of papers in a journal that are preprinted. This linkage can be used to answer other interesting questions. Such as: when do authors preprint their papers relative to submission? And does this differ by journal? There’s […]
Tag: PubMed
Pre Self: what fraction of a journal’s papers are preprinted?
Answering the question of what fraction of a journal’s papers were previously available as a preprint is quite difficult to do. The tricky part is matching preprints (from a number of different servers) with the published output from a journal. The easy matches are those that are directly linked together, the remainder though can be […]
Untitled: “The structural basis of…” titles for structural biology papers
This recent tweet made me chuckle. It does seem that many structural biology papers have a title that begins “The structural basis of…”. I took a quick PubMed survey to look at its popularity. First a search of “structural basis”[ti] AND “journal article”[pt] gives us the number of research papers with “structural basis” in the […]
Under The Same Name: Journal titles and band names
Some journals sound like they should be bands. Whereas some journal titles ARE in fact the same as band names. I wondered… how many journal titles are also band names. Let’s find out! The journals cited in PubMed could be downloaded as a text file from here. This list includes every MEDLINE journal – even […]
Represent: geographical breakdown of a virtual seminar series
During the pandemic, many virtual seminar programmes have popped up. One series, “Motors in Quarantine“, has been very successful. It’s organised by my colleagues Anne Straube, Alex Zwetsloot and Huong Vu. Anne wanted to know if attendees of the seminar series were a fair representation of the field. We know the geographical location of the […]
Same Time Next Year: crunching PubMed data
I am giving a talk next week and wanted to update some plots from an old analysis that previously featured on quantixed. The question is: how long does it take for a paper get published? The answer is complex (as previously discussed on quantixed), but we can at least find out using data from PubMed […]